mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGGGGGAGAGGCTGTCAGCA CAGAGCAGTTTATTCCTCCTCC GCTGGCTTCAGCATCCTGTGGGCAGAGCAGTTTATTCCTCCTCCATATGGATGGGGGAGAGGCTGTCAGCAAAGACTGGGTAGCTGAGGA ATTCCTCGTAGGGCATGATCTCTGGACACCGTGTCTGGCCTGGCAGATGGGCATGGCCCTCTTCCTTTTCTTTAGGAGCCTTGAAGGACAATTGTCAGTAAAACTTCTGTGAGCAGTGCAGAAATAGTCTGAGATTGAAAAGGCAGGTAGCATAGCTGTACACACCTGCAGACCAAAACAAAGGTGTGACGTCAGTGTCCTGAGTGCTGGTATTGCTGTGGGGTCAGAGGCTACAGTGCTTGGTGGTGAGAGCCTTGCTGTTATATCAGTCACCGCTCCCTGTCGACATCTTTACACATTTCCCAGTATCTCAAGATCCAGGAAGCCATGGCCACATCAGTTCAATGTCTCAGGAAACAAAAATAAGAATTTCGAAGGGGTAGCTAGGAGTGTAGTTGCCTGGGCCTAGTCTCTATCCCAGTGGCTAACCAATGTCAGATCTAAGCACTGCTGGCTTCAGCATCCTGTGGGCAGAGCAGTTTATTCCTCCTCCATATGGATGGGGGAGAGGCTGTCAGCAAAGACTGGGTAGCTGAGGATGGGGAGTTAGCGACACAAGAACCAGCTAGCAAGAGTCTGTCTGAGTGTCAAAGGCTCAGGGCTCAATGCCCACTAGTTTCTAAACTACCTCTCCCCAAGAATGGGAGGCCCGTGACCTTGCCACACACTGGGAGCCAACCCTTCTGTGCACAGTGGGAGACCGGAAAGAAGGTCACCCCAACAGAATGATAAATAGTGTGCATCTGAGAGACGCGGGTCTGCCCTACACCCACGCGGGTAAAAGATCCC 4 1 3' arm Rattus_norvegicus mirnest 100 100 -33.7 .....(((((((((((.((..((.((.((((((.((((((.(((....))).)))))).)))))))).))....)).)))).))))))). (-33.7)