mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGTGTTCACAGCGGACCTTGA AAGGCACGCGGTGAATGCC CGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCC CGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAATGGGGCTGTCTGAGCACCTTGGGTCCACGAGGGCCCGCCACGGAAGGATCGACTCAGCACAACGCCTTGTGCAGATTTCAGTGCTGCAGCTGCAGGCGCCCACAGTAGGGGTAGCGGACTTCTAAGTGTCTCGCAATGTAGCCCTTAGGGTGGGGAGGTGTGCGGCTACCAACAGAGAGGGGTTTGTGCAGATGCGAATAGAATCTAGGAAGCAAACAACTCGTTCTGTGATAGGAACACGTATCTATGCAAGCAGGGTGGTGGTGAAAGTAGAAAATAGCCTGGCAGGAGGGTGGAGAGTGAAACGTGCATCTTAGCATCTGGGACCCTGCCCATTGTAGGAGGCCAGCACCTTCATCCCTATCCGTTTTAGTTCCGAATTTCAATTTACCCTTAAACAAAAAATAATCGAGTACCCATGCGACTGGCGGACTGCCCCAGAGCCTGGACTGCAGCTACCTTGTGTACTGCTTGGGGGTTGCTGGGGGTAGTCTTTAGGGGAAGCTGTTTGTCACCCTTCGGTGGAGAGCTGCGGGCATTTGACAGGCTTAAGCAGGACTCTGGGGTGAAGGCAATCAGCAAATTTGTTCGTGGGCAGCACACAGACTCCATCAAAACTGACAGCTAGCCCACTGCTCAAAGCAGGGCCTCCCAGACTCCTTGGGGCTGTGACTGAAG 4 0 5' arm Rattus_norvegicus mirnest mir-124 1e-26 tgu-mir-124-2 8e-28 -19.6 .((((((((.(((..((((((((.............))))))))..))).)))))))). (-19.6)