mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATTTGAAATCGGT CGATTTCTCCTGGTGTTCAGA TCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAG CCACGCGTCCGAAGAACACCACTGGTCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAGCACCAGCCTCAGAGCCTTGTGGTGTCTGGTCAGCATCAGCCTGTCATTTCCTACACAGGCAGAGCAGAAAAGGAAGATCACAGTTTCCTAACTTCTTTAATGCATATGTATGTGGCTACAGAAGTTAGAGATCACTTACTGGGTTTTTTTTTTTAATTGTTGTAATTTATTGTTGTAAAATATGCTCAGTTACAATTTCTGACATGGAGTACCGTGATAAACTAGTTGCTGTTGAATCGTCTGTTAANGTGCTGGCTCCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3 1 3' arm Rattus_norvegicus mirnest mir-29 6e-18 rno-mir-3556b 5e-49 -31.6 ....(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))))..... (-31.6)