mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGCAAGCCAGTAAGCAGCA TTGTGGTCCTGGCTTGTTTAAA GCCATCCCTAGGTTGTGGTCCTGGCTTGTTTAAAAAAGCAAGCTGAGCAAGACATGAGGAGCAAGCCAGTAAGCAGCACCCCTCCAT GTTTTTTTTTTTTTTTTTTTTTTCTTTTTTGCTCCAAGACTCTCAGCTGTGCACCTGTGGTATTGGCAGGTGTGGGAGGTAAGAATAGGAATGACCCAGGTGTTTCCCTCCCAGGCCCTCAGCCACCAGATTCTACAATGGTGATGGGGCCAGGAGAGAGGAGGAGAGAGGAGGGCCCAGGCACTCTGGGGAAGGGTCTCTAAAATGTGGAGACTGGTCTTTTTCACCCAAAAGGAGAGAATGTGAATGGGTGGGGCTTGAGCAAAACTGGGCCAGGAAACAGCCTTCCTTGGTGTGCTGGCTAGGCTTACTTACGTCAACTTGACACAAGCTAGAATTACCTGAATAGGAAACCTCAATTGAAAAAACACCTCCATAAGATCCAGCTGTAAGGCATTTTCTTAATTAGTGATCAGCGTGGGAGGGCTCAGCCCATTGTGGGTGGGGCCATCCCTAGGTTGTGGTCCTGGCTTGTTTAAAAAAGCAAGCTGAGCAAGACATGAGGAGCAAGCCAGTAAGCAGCACCCCTCCATGGCCTCTGCATCAACTCCTGCCTCCAGGTCCCTGACCTGCTTGAGTTCCTGTCCTGACTCCTTTCAGTGATGTGG 5 1 3' arm Rattus_norvegicus mirnest 7SK 0.000000000000005 100 -20.6 (((((((...))..)))))...(((((((((....)))))))))...........((((.((..((......)).))...))))... (-20.6)