mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTGTGTCAATCCAGGGTAGA TATCCAGGGTAGACACTCAGA CTGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAAC CCACGCGTCCGCTCAGAACCTGTGACAGTGTGTGTCAACCCAGGGCAGACACTCAGAACCTGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAACCTGAGGCAGCATATGTCCTAAGTACACAGTGGTGTCTCACAAGCCAGTGAAAACAGATAGAAGCCAAATACCACATATCAAGGCAACCAGAAGATATGGGAGGGGCATTAGTGGGTGTGAGCCAGGGCTTTGTGACCCTGTCATCCTCAGGAGACTGACTGGTTTTCAATGAGTCTTTCCTTTCTTGGCCAATGTATGTATGTACTTAAGTATGTACGTATGTAACCTGTTGAGTCCAGTTAGTGCTTCCACCTCTTACAACATGCAAACCCTTTTCAGATTGTAACCTTCATATC 5 0 5' arm Rattus_norvegicus mirnest 100 rno-mir-3561 2e-35 -28.6 ((((....(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))))))... (-28.6)