mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTGTGTCTATCCAGGGTAGA AATCCAGGGTAGACACTCAGA TGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAA CCACGCGTCCGCTCAGAACCTGTGACAGTGTGTGTCAACCCAGGGCAGACACTCAGAACCTGAGACTGTGTCAATCCAGGGTAGACACTCAGAACCTGAGACTGTGTCTATCCAGGGTAGACACTCAGAACCTGAGGCAGCATATGTCCTAAGTACACAGTGGTGTCTCACAAGCCAGTGAAAACAGATAGAAGCCAAATACCACATATCAAGGCAACCAGAAGATATGGGAGGGGCATTAGTGGGTGTGAGCCAGGGCTTTGTGACCCTGTCATCCTCAGGAGACTGACTGGTTTTCAATGAGTCTTTCCTTTCTTGGCCAATGTATGTATGTACTTAAGTATGTACGTATGTAACCTGTTGAGTCCAGTTAGTGCTTCCACCTCTTACAACATGCAAACCCTTTTCAGATTGTAACCTTCATATC 5 0 3' arm Rattus_norvegicus mirnest 100 rno-mir-3561 3e-34 -27.1 .......(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))...... (-27.1)