mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGCAGGGGCTGTGCCCTGA AGGGCAGTTCTCCTCTTCTGC CTGTCCACTTACAGGGCAGTTCTCCTCTTCTGCCCAGAGCAGGGGCTGTGCCCTGAGAATTAAAG ACTAGACAGTTCGGTCGGAATTCCGGGATGACAGCATGGGGCTGGGCTGGGCAGGGCATGTTAGGTAGTTCACCTGGCCCTGTCCACTTACAGGGCAGTTCTCCTCTTCTGCCCAGAGCAGGGGCTGTGCCCTGAGAATTAAAGTGTAGCAGATGCAGGGCTCTAGGCACCAAGCAAGTCTGAGCAGGGAGGCGGCAAGGGTGTGGTTGGGAGGCTCCGCTTGGTGTGGGAGAGCCCTACAAGCTCAGGCCTAGTCGATGACTGGCTGGGACTTTTACTTTCCATCAGAGACTGTCCCTTGGGTAATCCTCTTCCTCCATGGCTGACAAGAGAGTTAGAACACAGGAACACTGCAGAACCTAGTGCTAGGGAACACACAGGGGTTCTCCACAGGCCCCTGAATGCAGTTTCTGTTTCCCCAAGCTGCAAAGAAAACTGCAGCCTAAATTCTTCGAAGTGCTTGGAGAAGGCTTGGCTGAGAATGTGGGATGTGTCAGCAGCCTCACTCTGTGGTAACAACAGTGTCTCTGTGGAGCTCAATTGGGTTTTGCTCCTGGTTTTCGGTGGTTGTGCCAGTGGACGAGAGGGAAGCCAAGAGCACTGACTGCAGATCGATAGCTAGACTGACAGACTGACTCAACCCTCACTGGACTTCATGGAACGAGTTCCTCTCTGTTGAGTGTANGCTCCCTAGCTCCTCACCTAGAAAGGAACCACTGCGTGTCCTCTGCACTTAATAGATTGGGTCTGCGCCACTCGAATAGCAAAGAGACTAN 5 0 3' arm Rattus_norvegicus mirnest 100 100 -20.5 ...........(((((((...(((((.((((....)))).)))))...))))))).......... (-20.5)