mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGGCAGAGGGGAAATAGGTA CCTGGCTCTCCTCTCTCCCAA TCAAGGGAGGGGCAGAGGGGAAATAGGTAAGGTGCTAGGATTGGAAAACATTCATACCCCGTGAGTCTCAGGGGCCTCAGGAGAGGGTCGGGCAATAGACACCTCGTGTCCCTAAGACCTGTGGTATCCTGTTCTCCTGGCTCTCCTCTCTCCCAAGGTTT GGCATGGACTTGACAGTTTCGGTCGGAATCCCGGGATCAGTGGGGGAGGGGCAGGTGGCAGCGAGGGAAGGAAAGGCAGCATCAAGGGAGGGGCAGAGGGGAAATAGGTAAGGTGCTAGGATTGGAAAACATTCATACCCCGTGAGTCTCAGGGGCCTCAGGAGAGGGTCGGGCAATAGACACCTCGTGTCCCTAAGACCTGTGGTATCCTGTTCTCCTGGCTCTCCTCTCTCCCAAGGTTTTCTCATCCGCAACTGCACGGTCACTGCCAATGCTGAGTGCACCTGTTCCAAGGGCTGGCAGTGCAGGGACCAGGAATGTACGGAGTGTGACCCTCCTCTAAACCCTGCACTGACTAGCCAGCCCTCTGAGGCCCCCAGCCCCCAGCTGCCACCACCCACCCACTTACCTTATGCCACAGGTACGTAGCAGGCTGCTCCTTATCCAGTCTCATGGGGGCCAGAAAGCTGCCAGCCTGGCACTGCCCACCCTGCATTTACCCCCAGCTAGGTTCTGGGCCAGCTTGTCTTCCTTCTGTCTGACTCCTGCAAAATCACAAGCTTTCCACCCGGGTCATCCTGAGAGGCTTCCTGCTGTGATTCATCTGTCTGTTTCTTCCAGAGAAGCCATCCTGGCCCCACAAAGGCAGCTTCCCGACTCACTGTCTATACCGCCTGCATGTGAGTGGTCTCCTAATCCCACCCAAAAGACAGGAGGAAGAGGCAGATACACCCCGGAAACCTAGCCTGGTGAGGAAAATCATGAATGGCTGCGCCGTGGACTTCCCAAGCGAGAAACTGATTGACGTGTTGTGCTAATCAGTAAACGGCCCACAACTCCTCGGTAAA 5 0 5' arm Rattus_norvegicus mirnest 100 100 -53.1 ........((((.((((((((..((((..(((...(((((.((((.....))))((((.((...((((.((((((.......(((((((........))).))))..)))))).)))).)).))))))))).)))))))..)))))))).))))....... (-53.1)