mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCTTTTTGCTCGTCTTATA TAACCCGGGCCAAAAGCTCAC CTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCA CGGCCGCATTGGAGCGCTCCACATCCACCATCAGGTCCTCGATCTCGTTCTGCAGCCTGTGCTTGGTCTTCTCCAGAGAGGAGCACTTGGCGTTGACGGCCTCCACTGCCTCCTCAGCATCCTGAAGCCTCTGAGCCAGCTTCTTCCTGCAGCAGGGGAAAGCGTGTGACTGTACTTGTAGCCACGAGGCTGTGAGATGATGCCCTACTTCCTAGTGCTGATGAGAAAGACCCAGCTTCTCCCCACGGCTTCCTAAGACGATGTAACCCCGGCCTAGAGGAGGCGAGGTCTGTTGGTACCTAGAACAGTCTTCCACCATGGGCTGATCAGACTCCCCCCATACACACAGCACATGGGTGTGGCAGCGCGGCCCCGCCCCTTCCCGTAAGCCCAGGCTGAGAGACGATAGCTCCTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCA 4 0 5' arm Rattus_norvegicus mirnest mir-208 8e-26 rno-mir-208 1e-36 -22.8 ...((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....)))) (-22.8)