mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGCTGGTTGAAGGGGACCAA GGTTCCATTTTACCAGCTTCA TGGGCGGCGCGGCGTGATCAATGCACAGCTACAGCTGGTTGAAGGGGACCAAATCCATCCAACAGCTGATTTGGTTCCATTTTACCAGCTTCAGCAAAGCATTTGGCTTCTGATCCACTGG TTTTTTTTTTTTTTTTTCCGGGGTGAGAAGAACATTTATTTTCACAGCCTCTTGGCAAATGACTGGGTTGGGTCCGTCACAGCTAGGGGAGAGGTGACAGCTTCCTGCTCAACTTGCCTGCAGAGGAGACAAGGGGAGGAGCCTGGGTTCCAACCCAGGGCCACTCAGGGTCCCAGGCGGTGCAAGTGACCTGGCTTTCTTGGAGCTGACCATTGCTGAGGCCTTGCCGCATCCCTTGAAGACTCCTCGTTGTGGCCGTGTCCTGGCTGGGCGGCGCGGCGTGATCAATGCACAGCTACAGCTGGTTGAAGGGGACCAAATCCATCCAACAGCTGATTTGGTTCCATTTTACCAGCTTCAGCAAAGCATTTGGCTTCTGATCCACTGGGAGGAGTGACTCAACCAGGAAGAAGGTGGCTCTGTCAGATGGATGTCCTGTCCCAGGCTCTCCCTGCTCTGAGAACCCATGCAAACTCAAGGGCTTTGGAGGTCTTCGGGGTCTGGGTGTGAGCGGGTCACATGAACATTAAGACCCTCTATGTGCCCCAGAATGGTAACCCCAGGACCTCACTGGGAAGGAGAAAAGCAGTTCCTGGTCCTTATACCCACAAC 3 0 5' arm Rattus_norvegicus mirnest mir-133 1e-28 mmu-mir-133a-2 3e-51 -43.3 ((((.(((...((((.....))))...)))..(((((((.(((.(((((((((((............))))))))))).))).)))))))((((..((((.....)))))))))))).... (-43.3)