mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAGTAGTCTGCACATTGGTT CCAGTGTTCAGACTACCTGTTC TGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAG CTCCCCCTTTTCGTGGTCCTAAATTCATTGCCAGTTCCCTTGTCTGCTGCAAATGTGCCACGTCAAGACTGGAAATCACAGCCCTTTAGTGTGTCTCAGTCAATGCAGCAGACAGAATTCAGGGGGGAAGCTGAACAAGCCCCTGGTGCGGGAAGACAGGCTCTCCCCAGTCCCGGGACAGGATTTTCCACACACGGATGGAAGCTTCTGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCCGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGCCAGCAACGCCATGGACGGCTGGGGACAAAATGTGCTGTTTCCAAGGAGAGGACAGCTGGGTGCTCCTTTGTTGAGTCTCATATCCAGTGTTTCTCTTCACAGGTTTTGCAAACTAGGGACCAGAAAGCCCTCAGGGACTCTGCCAGGGGAGAAGACTGCTCCAGGGAAGACCAGCGGGTAAGGCCTCGGGGACTGAGTACCTGGTCTGTGATTGGGGGACTAGATAGGGATCCGTCAGAGTCGTCTGGTAAATAGTGACTTTCTGTATGTTTTTTAAAAGTCTGAAGGTTGATAATTCAAATGCTTTCTTAAATGTAAAGGTCTTCCACTTCGAAACAAAAAATGAAAATACCTCACTCTGGACATGTAACAATATCTGAAGGAGACTTAGTTTAGAATGGTTGAAACTGACAATTCAGAGACTTAAACTCGGGCATGACTGTGCGCTATGCATACAACCTCTGACAACCCAGAATGAATGCATTTTGCCCTAAAGGAAAAAAAAACATGCCATTTTCAAAACTCTTGTATGACAGGGAGCTTCTCTTGTTTAC 3 1 3' arm Rattus_norvegicus mirnest mir-199 3e-44 rno-mir-199a 8e-51 -38.9 (((...((.(((((.(((...(((((((.((((((((.(((.(.((......))...).))))))))))).)))))))...))).))))).)).))). (-38.9)