mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAATACAAAGTTGAGTCATCT ATGACGCAACTTTATACTAGC CCTTCCATGCTACTCCCTCCGGTCCAAAATAGATGACGCAACTTTATACTAGCTCTAGGACAAAGTTAATACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTGGTAGTTATA TACGACCCACACTGCCGCGACTGGGCACGAGGACACTGACATGGACTGAAGCCGTAGAAAAAATTTGAAGAGTCCCCGGGGGGGTACCACTCTCTAACCTTACGCAGGCCGCCTTCGTCGTCTTCCTCGGAACGCCGCCGCCGAAGTGCGCCTCGAGTAATCCCAGAGGGAGGAGGAGCCAAGTGTCGATCGGAGATGAATGCCCCTGACCGCTATGAGCGCTTCGGCGTGCCAGAGGGCACGAAGAAGGTATCATTTGAAAAGGATACAAAGATCATGAATGCGGGGTCTTTCACTATTGAACGTGAGGACCACACCATCGGCAACATCCTCCGTATGCAGCTGCACAGGGACCCAAATGTTCACTTTGCTGGCTATAAGCTCCCTCATCCCCTTCAGTACAAGATCATTGTGAGGATCCATACTGCAAGCCAGTCCTCCCCAGCTCAGGCATATACCCAGGCAATCAATGATCTAGACAAGGAGCTTGAGAACCTGAAGCAAGCTTTTGAGGATGAGAAGACCCGATTCGAGGAAAGGATGAAGCAGGGCTACTAGGCCAAGGGTGTTCTGGATGCTGACGTGAAACCTTCCATGCTACTCCCTCCGGTCCAAAATAGATGACGCAACTTTATACTAGCTCTAGGACAAAGTTAATACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTGGTAGTTATATCGAACTGCGGGAGATAACAAATTACTCAAGGATTTAGGATGGTCCTCTGAACTCATAGAACCTCTTCATGTGCGGATTGCGTATGATGGCACGGATGTAAACCATCTGTGGGCACTTGCTTACCCCTCAAACCAATGTCAGTGTTCTGGGGGCGGCGGCTCTAAAGTTATCCTTCGAGGGGCCCACCTTTACTCTTACCCGGGTTCCTGGCTCCAAGGGGGGCCCTAAAGTGGGTCGATTTTATAACCTAAGAACGGGCCAGTGGTTAAAAAGGTTCGGGAGTGGGAAAAAGGTTAACCTTGGGAACTTTTGAAAAGGAACCTCCCTTTGGGGGGGGGGAC 3 0 3' arm Triticum_aestivum mirnest MIR1122 2e-27 tae-MIR1137 0.000000000000002 -57.4 .......((((((((((((((.(((((((((((((((.(((((((.((.(((((.........))))).)).))))))).))))))))))))))).))))))))))))))...... (-57.4)