mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCTTCTTGT GAGACGAGGAAGAAGAGAGAAG GCTGCTTAAAACGAGACGAGGAAGAAGAGAGAAGGGGTGGTACTGATTCTAGTTATACATCTCTGCTGAAGATGTTCAGAAGCTCGAGATTTTCATCATCATCATCTTCTTGTTTTTTGCCC CGGCCGGGGTGAAGAGTTGAGAGCAGCTGCTGCCACGCAGTTCGGTTCTGGCTGGGCTTGGCTTGCTTTTAATCCCCGTCCATCAGATGGGAAGGAGCTTCTAGTAGTGAGGAGTCCCAATGCTGTGAATCCCCTGGTTCTGGGCTACATACCACTCCTCACGATTGACGTATGGGAGCATGCTTACTACCTTGACTATCAGAACCGACGGCCTGATTACATATCAATCTTCATGGAGAAGCTCGTTTCCTGGGATGCAGTTAGCGCTAAGCTTGAGGTTGCCAAGGCTCAAGCTGCTTAAAACGAGACGAGGAAGAAGAGAGAAGGGGTGGTACTGATTCTAGTTATACATCTCTGCTGAAGATGTTCAGAAGCTCGAGATTTTCATCATCATCATCTTCTTGTTTTTTGCCCGAAATGGTCCCATAATAACGGACCCGTTCCCTATTCTCTCTTAGAGGACGCAGGGGGGAGACTGGACCGAAACTTGCTTTCCCTTCTTTGTTGTCGTGAGAAATATCCCATATTTTGCGCTGAATCTATGAGGTGGGATTGCTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGTCGGCCG 5 1 3' arm Eucalyptus_gunnii mirnest 100 100 -29.7 ...((..(((((((((.((.((.((.((..(((((.(((..((((....))))..))).((((.(((.............)))..))))))))).)).)).)).)).)))))))))..)).. (-29.7)