mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTCGCACGTATGGATGTAT ACATCCATTTCAGCGACGAGT AAACACATTACTTGTCGCACGTATGGATGTATCTAGATGTATTTTATTTCTAGATACATCCATTTCAGCGACGAGTAATTTGGA TGCGATTTTTTCAGTGGATTCATTTGCTGCTTTAATGTGTTTCCTTTTTCAGATGCTCCACCAAAGCCCGTTCATGAAGAGCCGGCACCTCCCAAAGAAAACAAGGGCAAGCAAGGCAGAAACATCAAGGAGGTGAAACATGTGACGAGCGTTCACAAGATCCTCAAATTCCGGTCGACCAGTGAGGGTCGTCAGAAGCACAGAGCATACCGTTACAGGGACAAGGAGTTTTGAAACACATTACTAGTTTTGAAACACATTACTTGTCGCACGTATGGATGTATCTAGATGTATTTTATTTCTAGATACATCCATTTCAGCGACGAGTAATTTGGAACGGAGGGAGTAATATAAGAGTACTGCTCCCGTAAAAAAAAAA 4 0 5' arm Triticum_aestivum mirnest MIR1122 1e-34 tae-MIR1136 3e-28 -40.1 ...((.((((((((((((....(((((((((((((((.(((...))).)))))))))))))))....)))))))))))).)).. (-40.1)