mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAATACTCCCTCCGTCCGGA CGGACGGAGGGAGTAGAAGCT CTCGCAAATAATAAATACTCCCTCCGTCCGGAAAAGCTTGTCCCAAGCTTGTTCCAGTTGGTGCTAGATACATCCATTTGAGGGACAAGTTTTTTCGGACGGAGGGAGTAGAAGCTCCTTATTA AGCGGCCGCCCTTTTTTTTTTTTTTAAAGCCCTGAATAATCTTCAGACTCCACCAAAATATGATAGGTTTTCATGTTCTCGCAAATAATAAATACTCCCTCCGTCCGGAAAAGCTTGTCCCAAGCTTGTTCCAGTTGGTGCTAGATACATCCATTTGAGGGACAAGTTTTTTCGGACGGAGGGAGTAGAAGCTCCTTATTAGCTGAACTTTAAGTTTCCCAAAGAATCTAGAGCTTCAGATACGGTATGTTACCGCAATCCCACCCAAGGAGATTGCTCAGATCCTCTTGAGAAGCGCTTTCAGATGCGGCTGTAGACTGTTTGTGATTGTTGCCATCTGAACGACGTATGAGAGCTCCCCATCCACCACCTGAAAAGCCCTCGTGATCTGCTTCACCTTTGATGCATTGCCAATAAGTTCGCTTTGGAGTGTCACTGTTTTCTTTTCACTGTCATATGAACCCGTCTGGACCTCGGTGAGGCCTGTGCTCTGGGCGATGACCACCTCGACGGAGCCGTCGGGGCGGGGCCGCCAGTACCCACTCTCGGCGTGCATCGGGTCGCCGGACGCCGCCTTCCACGTCTTCTGCGTGTACGAGATCACCGGCTTGGAAGGGTGGTGGGAGAAGAGGATCTCCTCGCCGTAGCGGAACGGGGCGATGGAGGGGAAGGTTCCCTCGCCCTCGCCGCGCCACTTGCCCAGCAGAAACGACAGCGGAGCCACCAATGGGTGCGGCGCCGGCGGCTGCGTTTGTGGGCCGGCAGCTTCCATTTCTTGAAGTCTCCGGTTGGATTTTCGGACTGGTCTCACCTCTCCGGACGCGTGGGTCGACGATATCCCGGGAATTCCGGNACGGTACCAGCCTGCTTTTTTGTACAAACTTTGTCTATAGTGTCACCTAAATAGGGCTANTGGTCATAGCTGTTTCCTGGGTGAAATGTTATCGGTCCCGCGGCCTAAGGTAAAGTTCGGAAGCTGGGTCCGTCCCGGGGTTTTATTGAGGGTAAAAAAAGGTGGTGGGTTTCCAGGGACTGACGGTCATTAAAAAGCTCGTTTTTTTAACTCCCCCGTAAACCTACCGCCATTTGGTTTAGGGGGGGGGTGTTCAAATTTGGGAATCCCTGTTATTGGGGCAAAAAACCCCCTGCCTCAGGGGTGGGATGGAACCA 4 0 5' arm Triticum_aestivum mirnest MIR1122 8e-18 tae-MIR1133 0.000000000007 -52.9 ...............(((((((((((((((((((((((((((((.(((.....((....)).)))((((......))))..))))))))))))))))))))))))))))).............. (-52.9)