mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTATGGAACGGAGGGAGTA CGCCCTCCGTCNCATAANGTA TGCAACTACGCCCTCCGTCNCATAANGTAAGACGTTTTTTCACACTACACTAGTGTCAAAAAACGTNNTACATTATGGAACGGAGGGAGTATTANCTTAC TGCAACTACGCCCTCCGTCNCATAANGTAAGACGTTTTTTCACACTACACTAGTGTCAAAAAACGTNNTACATTATGGAACGGAGGGAGTATTANCTTACTGCAGGGNAGAGGCTAGCTAGCTTCNCGAAGCCTCNTGANAANGGTATCCA 4 0 3' arm Triticum_aestivum mirnest MIR1122 6e-18 tae-MIR1130 0.00007 -42.4 ......(((.((((((((..(((((.(((..(((((((((.((((((...)))))).)))))))))..))).)))))..)))))))).)))......... (-42.4)