mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTGTAAACTAATATAACAG CTTATATTAGTTTACGGAGGG CGAAGGACTCCCTCTGTAAACTAATATAACAGCCTTTAAATGACTAAAATACTGATCTAAACACTCTTATATTAGTTTACGGAGGGAATAGTAG TNNNGCGGTCGCGGCCGAAGGACTCCCTCTGTAAACTAATATAACAGCCTTTAAATGACTAAAATACTGATCTAAACACTCTTATATTAGTTTACGGAGGGAATAGTAGTTACAACATGAACAGCAAGTAATAACAGGCAGCAAAAGGATCATCAGATATCCACCAGAAGCTGCTTGCACAGAGGCTTAAGGAGCAAAGAGACCGCCGGAGTGAGAGCATGGCCAAGAGGAGGTCCAAGCTTTCTGCTGCTACCAAGGCTCCTGCTGCCTCTGCTTAAGATGTTTACAGTCTTTCATTAGTTGGACAAAACTACCCTCTACTTTCAGNTTTCTTGAGTTGGTAGTTGATGATATTTTGCATGAACATGGGTATTTATCGGCTGGAGTTTGTTACTGGAATTCTATGTTAGTTTCTACTCAAGTAGAGCTGAAAGCAATAGGTCTTATCATCTGTTTGAAATGTTCTAGTACCTGCCCGGGCGGCCGCTCGAA 1 0 5' arm Triticum_aestivum mirnest MIR1122 4e-25 tae-MIR1121 0.0000003 -28.9 ........(((((((((((((((((((((.((..((((.((.............)).))))..)).)))))))))))))))))))))....... (-28.9)