mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTGTAAACTAATATAANAG TTTATATTANTTTACANAGGG CATACAGATACATTATACTCCCTCTGTAAACTAATATAANAGCGTTTANATCACTAAAATAATAATCTAAACACTTTTATATTANTTTACANAGGGAGTACTTGTATTACTGTA CACGTGTGGCANTNGAACGGGCAGGGCATGGCAAACTGCGGGCTCATCGAGGGGATCGCCGACTACGTGCGGCTCATGGCCGACCTCGCNCCGACGCACTGGCGCCCNCAGGGGANCGGCGACCGTTGGGACGAGGGGTACGACGTGACGGCCAAGTTCCTGGACTACTGCGACTCCCTCAAGGCCGGGTTCGTGNCGGAGATGAACAGCNAGCTCAAGGACGGATACAGCGACGACTACTTCGTGCAGATCCTGGGGAAGAGCGTGGACCANCTGTGGAACGACTACAAGGCCAAGTACCCCCAGCCCCANGGCTGATCGACGATGCATGCAGTTTGTTGTTGTATGTGTACCGGTCTTCGTCTACATACAGATACATTATACTCCCTCTGTAAACTAATATAANAGCGTTTANATCACTAAAATAATAATCTAAACACTTTTATATTANTTTACANAGGGAGTACTTGTATTACTGTACAATTTATGTACTGCCTGGAATGGAATAAATCANC 3 0 5' arm Triticum_aestivum mirnest MIR1122 1e-22 tae-MIR1121 0.00000002 -37.5 ..((((((((((...((((((((.((((((.((((((((.((.(((((.((.............)).))))).)).)))))))).)))))).))))))))..)))))..))))) (-37.5)