mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCCGTAAACTAATATAAGAG CTTATATTANTTTACAGAGGG CAAGGCCTATATTACTACTCCCTCCGTAAACTAATATAAGAGCGTTTANATCACTAAAATAATGATCTAAACACTCTTATATTANTTTACAGAGGGAGTACTTGTTGACANTCN TGATCAGTACTGGGACACCTACGTGCTGAGGAGATTCCAGAGGAGGAGAAGAATCTCACTGCACAGGATCGGTTGATTCACGTCTATCATTTCATGAAAGATCCTAATCAGAACCAGCAGATTCAGAATTTTGGAGATCCCTTTTTGCTGGTCATCCGTGAAGGTGAGACTGCTGCAGAGGTAATGGACCGTGTGCAGAAAAAACTCCGAGTTCCCAATGAAGAATTCGCCAAGTGGAAGGTTGCATTCATATCCATGAATCGTCCAGAATACCTCCAGGATATTGATGCTGTGTCTGCACGCTTTCAGAGGAGAGATGTCTATGGAGCTTGGGAACAATACCTTGGCTTGGAGCATACTGACACAACACCCAAAAGGTCTTACACAGCTAATCAGAATCGACACACATATGAGAAGCCTGTGAAGATTTACAATTGAGAAACCTTCCATCTGGGCTGCAAGCCCCGGACAAAGGCCTCATCCGAGAAAGTATGCTGAAGAGGCCAAGTGACCTCAACAGAAGGGAAATGCTGTCAAATATATGGTCATTTGTGTGCCAAGGCCTATATTACTACTCCCTCCGTAAACTAATATAAGAGCGTTTANATCACTAAAATAATGATCTAAACACTCTTATATTANTTTACAGAGGGAGTACTTGTTGACANTCNGTGCTGTGGTTGGCANAANATATATTCTTTNANGCTTTCCCTCTTGCCTGCTCCCTGNC 2 0 5' arm Triticum_aestivum mirnest MIR1122 5e-31 tae-MIR1121 2e-18 -39.8 ...............(((((((((.(((((.(((((((((((.(((((.((((.((...)).)))).))))).))))))))))).))))).))))))))).............. (-39.8)