mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGTGGAGTGGACTGGAGT TTTTACTACTGTACTCTACA TGCTCAGCCAGTGGAGTGGAGTGGACTGGAGTGCTACTTTTACTACTGTACTCTACAAGTGTGGA CCGAGACGGAGGCCGAGGCGCCCAAAGAGCCAGCCGTGGTCGAGACAGAGACCAAGGAGGCCGTGGCAGAGGCAGAGCCGGCAGTCGTCGAGGAGGTGAAGGAGGAGGCGGCGCCTGCTGCCGAGCCGGAGGTGCCGGCCGTCGCCGAGGAAGCACCGGCTGCAGCGGAGGAGGCACCCGCGGCCGCGGCAGAGGAGCCGGCCGACGCCGTGGCCAGCGTCAGCGTGTGAGGCGCCGGCGCGCGCGGAGGAGGAGCTGGCTGCGTCAGCGTCCACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCTCAGCCAGTGGAGTGGAGTGGACTGGAGTGCTACTTTTACTACTGTACTCTACAAGTGTGGAGTGGAGTGGAGTCTATCCCGGGTCNCTGACNTGGCTAAATAAANTGTTTCGTAACATCAGCGACCNANCANTCCACTCAAATATTANCCTTTTATTGTCAAAAACATGATCATTATTCTACGGAAAAATTTTTTTTTTTTTTTAACANAAANCTCCAGGGGAATTACCATTTTAANATG 3 1 5' arm Triticum_aestivum mirnest 100 cre-MIR1171 0.0002 -18.5 .((...))..((((((((.(((((...(((((...)))))..))))).))))))))......... (-18.5)