mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCGTATCTAGA TAGATACGGAGGTATCTAGN TACTNCCTCCGGTTNAAATTACTTGCTCTTANATTTGTCTAGATACGGAGGTATCTAGNACNAAAAGTAAGTCTAGATACATCCGTATCTAGANAAATTCAAGACAAGTAATTCGGAACAGAGGGAGTACGTA TACTNCCTCCGGTTNAAATTACTTGCTCTTANATTTGTCTAGATACGGAGGTATCTAGNACNAAAAGTAAGTCTAGATACATCCGTATCTAGANAAATTCAAGACAAGTAATTCGGAACAGAGGGAGTACGTATTTACAATCGGCAGGNAATTAACCANCCAAGTTGTTGCTAAACAGAGGCTGGAGCCTGGAGCTAGGAGAAAACACCTCTTTGTAGCTAGTACTAATTGGGACCCCAGCAGCTGAGGTACATCACCGTCCTCAGCCCTTCCTCGGCCTTCTCCCCTCGCCGCCTTTCCGCCANNGCTGCCGAANCCGGAAGCTGCTTTGCGCCCNGCAAGACGCCACNGCGAACGTTGGCCCTGGCCTTGGCTGCCCGGTGGATGGACCTGAGCGCGTANTTCCAGCGGCAGAGCCCGGCCTGGTCTTTGAGCGCCNCCACGCCGCCCACGCTCATCGCCACCATCCACAGACGCCTTCGCCGCACCTGCCATGATCTCTCTGCAACTCTGTTCTTCTCGCCGCGTTGGAGGAGATGACGCCGCTGAAT 1 0 3' arm Triticum_aestivum mirnest MIR1122 1e-29 tae-MIR1136 0.000006 -54.2 ((((.((((..(((..(((((((((.((((..((((.((((((((((((.((((((((.((.........)))))))))).)))))))))))).))))..)))))))))))))...))).)))).)))).... (-54.2)