mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCATATCTAGAC CTAGATACGAAGGTATCTAGC ACCTACACCCTCCGTTCCAAATTACTCCATATCTAGATTTGTCTAGATACGAAGGTATCTAGCACTAAAATGAGTCTAGATACATCCATATCTAGACAAATCAAAGACAAGTAATTCAGAACGGAGGGAGTACAAT CTTCTCCACCCAGTCGTCTTCTTCTAATTCCCAGGCGATGGACGGCGGACGCCTCGCGGAAGCAGTAAGAAAAGAGAGGATCCCCTCTTTTCTTTTCTTTTCTTTTCTACCTACACCCTCCGTTCCAAATTACTCCATATCTAGATTTGTCTAGATACGAAGGTATCTAGCACTAAAATGAGTCTAGATACATCCATATCTAGACAAATCAAAGACAAGTAATTCAGAACGGAGGGAGTACAATACACTAAGCAGGTAGGCACTTTTTTGAAGGAGAAATGCGAGAGCCAGCTGCACGCCATGATCGACCAGGTCAGCGCCCAGCAGGAGAAAATCGCCGCGCTTGAAGAGATGAAGGTACGCCAAGACGAGGAGCGTGTGCAGCTCAAGATTTTAATCCAAGATCTTGAAAGTAAGTATGTATGTATGCAAGGAATCATTAATTACCCTCTGTGTTTAGCCTTACTTGATGATTTCAGCTACCCTAGTTGATTTTCTCATGCTTCCTCTTCTTTTAGTAGTTATNN 2 2 3' arm Triticum_aestivum mirnest MIR1122 1e-35 tae-MIR1122 0.000002 -52.4 ...(((.((((((((((..(((((((.....(((.((((((((((((((.((..((((((((.(((......))))))))))).))..))))))))))))))..)))..)))))))..)))))))))).))).... (-52.4)