mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTCCGTTCGGAATTACTT GTAATTCCGAACGGAGGGAGT ATTATTTGTACTCTTTCCGTTCGGAATTACTTGTCGTGGAAATGAATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTTGAGACAAGTAATTCCGAACGGAGGGAGTACTACACA ACATAATTTCTAATAACATTACAGAAAGTGGTAGTTCTGTGTTACACTGTATTAATTGTACAGAAACCTGCAAGTAGCTAGGCAAGCTGTGACACCGCAAAGACGCCGAACAGCATGGAGATTATTTGTACTCTTTCCGTTCGGAATTACTTGTCGTGGAAATGAATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTTGAGACAAGTAATTCCGAACGGAGGGAGTACTACACAAGGACGCTCACTTTAGATGTGTGTTTTGATAGGAAAAGGCACGGACGGAGCGATGAATCAACGGGTCATCCCTGGGTGCATGAGGGGCGGCATGGTCGCCGGGGTGCGTCCTTGCCTCTCCATGTTGGCGTGCCATCCGAGGTTCATGTCGAAGCCTCTCTTCTTGAGCTCGCGGTACTCCTGGCAGAGCGCGCATGGCTCGCAGCACCAGTGGATGCAGCAGTCGGCGCAGGGGCTCTCCTGGAGGCCGTANTGGGCGCGCATCTTGGCGCGGTANAAGCANGAGTANACGCACTGGCAGCCCGTGAGCANCATGATGANCGCGTANAGCGCGCCGCTCGCCCCGCACGACNTCNACCCNCG 0 0 5' arm Triticum_aestivum mirnest MIR1122 2e-34 tae-MIR1135 2e-30 -63.7 .......((((((((((((((((((((((((((((.((((((((.(((((((((((...((....))))))))))))).)))))))).))))))))))))))))))))))))))))...... (-63.7)