mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTTCGGAATTACTT GGAATTCCCGAACGGNGGGAAG TAAGAAGCTACTCCCTCCGTTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATATGTTTAAGATACATCCAATTCTACGACAAGGAATTCCCGAACGGNGGGAAGTACGNACT GAAAAAAAACAACTCCTTCGAGAGATTTCGCGGGGCGCAGGTTCGTGAGGAGCTAGGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGCTGGGGAAGAAGGTGCGGGTGAAGTGCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCGCATCCAAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGNGACTACGAAGATCCACGACGGCATGGGCCTCGAGCTCTACTACAACTAGAAAGTATGGCCGCATTTGAGTCCCGTTGTCTTAAGAAGCTACTCCCTCCGTTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATATGTTTAAGATACATCCAATTCTACGACAAGGAATTCCCGAACGGNGGGAAGTACGNACTACTGGNAATGGGATCCAACGAACCAATAGGANGACTGGCTGGGTTGTACCAAATGACTGGCCGANCTTGAAATACTGAAATGNTACNTATAANT 2 1 5' arm Triticum_aestivum mirnest MIR1122 3e-23 tae-MIR1135 5e-28 -51.5 ......(((..((((.((((((((((((.((((((..(((..(((((((((((.((((........)))).)))))))))))..)))..)))))).)))).)))))))).)))))))....... (-51.5)