mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTTCGGAATTACTC GTAATTCCCAACGGAGGAGG TAGCAAATTACTCCCTCCGTTCGGAATTACTCGTCCAAAAAATGAATGTACCTAGATGTATTTTAGTTGTAGATACATCCATTTTTGTGACAAGTAATTCCCAACGGAGGAGGAGCTAGCA TCCAAACATCAACTAGGATCTACTTATCACTTTTCTCGAAAAAGGTAGGAGTGGAATGTACTTTCAATTTGTCTCAGATTAAAAAATTAGAGCGTGAGGATTTGGTCAATAACAAAGCAAGCAAGAACCTACGAAGCAGATCTACTGGAAATTACTCCCTCCATTCGGAATTACTCATCAAAAAATGAATGTACCTAAACATATTTTAGTTGTATTTTAGTTGTAGATATATCCATTTTTATGACAAGTAATTACGAACAGAAGAATAGCAAATTACTCCCTCCGTTCGGAATTACTCGTCCAAAAAATGAATGTACCTAGATGTATTTTAGTTGTAGATACATCCATTTTTGTGACAAGTAATTCCCAACGGAGGAGGAGCTAGCACGCTGCTCCATTCCTTCTGCTTGATGACCTTCTAAACGAACGAATTTGGCTGCAGAGTCGCGCGCCATCAACCGGTACATCGCGACCAAGTACGGGGCGGAGCTGCTGCCGACGCCGTCGGCCAAGCTGGAGGCGTGGCTGGAGGTGGAGTCGCACCACTTCTACCCGCCGGCGCGCACGCTGGTGTACGAGCTGGTCATCAAGCCCATGCTGGGCGCCCCCACCGACGCGGCCGAGGTGGACAAGAACGCCGCCGACCTCGCCAAGCTGCTCGACGTCTACGAGGCCCACCTCGCCGCCGGCAACAAGTACC 2 1 5' arm Triticum_aestivum mirnest MIR1122 4e-35 tae-MIR1127 2e-24 -42.3 ((((......((((.((((((.(((((((((.(((..(((((((.(((((.((((((........))).))).))))).)))))))..))).))))))))).))))))))))..))))... (-42.3)