mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCCTCCGTTCGGAATTACTT GTAACTCCGGACGGAGGGAGT TAACTAATGACCCCCTCCGTTCGGAATTACTTGTCGCAGAACATGGATATATCTAGACCTATATGGGTCCTAGATACATCCATTTTCGAGACAAGTAACTCCGGACGGAGGGAGTACAAAGCA CCTTCCGTAATTTAAGATCGCGAGCGGCCGCCCTTTTCGTTTCTTCCCTTCCGGTGGGGATCAACTCATACAACTCAGCTGCATACACTGCTACTACTGATAATAACTAATGACCCCCTCCGTTCGGAATTACTTGTCGCAGAACATGGATATATCTAGACCTATATGGGTCCTAGATACATCCATTTTCGAGACAAGTAACTCCGGACGGAGGGAGTACAAAGCATCAGAAACTGATGGTCCATCCAAGTGACATTGCTCACTGACTGGTGACTGCTTCTGTATATAAGCTAGTGATACTAGTAGGACAAAGACACATCCATCGTATAGCTATGACGATGGATCCACGGCGATTGTTTCAGCTTCTCCAGTCCTCACCATATGCATGGCACTCCATTAGGTAGGGGTAGATGATAATCTACTCTTCACATGTTGCTAGACATCCATGCCGGTAGGCACCATGGGACTGGGAAACTGAAGCACAGGGATGGCGCCGGAGCTGGCTCCTGCGGCTCGGCCACGAGGATGTAGACCAGGCCCATGACGCCGGTGTGCTGGCGCACGCTGCTGTAGTTGGAGACGATGGTCAGCACCTCACCGTCACTGACCTTGATGGATCCTGGCTTAGGGTAGCACGTCGACATGCCAACGATGTAGTTCGCCTCGTTTCCTGCCTCCTTCCCTGTGCCGTAAGTTGGAAGCGATTCACAAAGAAGGCGTCCATCCTGGCCATGNCAAGAAGCACCAACTCCTCCGGAGTGCTGGTGCGCAACACTGAACACGATATCTCCTCCACGCGGCAAGGCCGCTCTAGCAGTCTTAGTATGGATGCACTCATTGTGGGCTCGNTNNNNNGNNNNGGCCGNNAAGAACGTNTGAATTGATGAGAGCTGTAAAGGTCTGATCAGTGGCCCCGCATATCCCGGTATGAACGCTGGCACCAAAAAGTCTGTGCAGATACCTTATCCCTAATGGCGTGGTGGCTACTCCCGGCTCCGGAATAGATTTTCGGGTGGCTTGGCTTAGGAGATTTTCAGGGCGGGCATACAGTGTTATAATCCTCCGCCAAATTTTTCTAAAAATTCGGGAGCGGGGGACGCCACGCGTTTTGCAACATGGGGGACCGTAACTGCCCTA 2 0 5' arm Triticum_aestivum mirnest MIR1122 2e-24 tae-MIR1135 7e-21 -62 .......((((.(((((((((((((.(((((((((...(((.((((((.(((((((((((....)))).))))))).)))))).)))..))))))))).))))))))))))).)).))..... (-62)