mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTTCGGAATTACTT GTAATTCCGAACGGAGGGAGT TAAGAAGCTACTCCCTCCGTTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATATGTTTAGATACATCCATTTCTACGACAAGTAATTCCGAACGGAGGGAGTACGTACTA CGTACCGCGATCGGAGCACGAGGACACTGACATGGACTGAACCGATAGAAAGTGAGATTCGCGGGGCGCAGGTTCGTGAGGAGCTAGGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGCTGGGGAAGAAGGTGCGGGTGAAGTGCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCGCATCCAGAAGTGGTACACCATCTACGAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGCTCTACTACAACTAGAAGTATGGCCGCATTTGAGTCCCGTTGTCTTAAGAAGCTACTCCCTCCGTTCGGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATATGTTTAGATACATCCATTTCTACGACAAGTAATTCCGAACGGAGGGAGTACGTACTACTGTATATGGAATCCAACGAACCATAGAAGACTGCTGGATGTACCAATGACTGCCGACCTGAAATACTGAATGCTACTTATAATTGTGATGTGATGTGACGCTACTCGTACACTACATATAACATAATGTTTGTGACCCNNNNNNNNNNNNNNNGNNNNGNNANNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNCNNGNNNNNCNGNNNNNNGGGGGGCNNGNNCNCGGCNNGNNNGGNGGGGGGGGGGCCCGGCCCCCCACACCGGGGGGCCGAAAAGGGGACCCCCCCACACCGGCAAGCCCAGGGCCGGGGCCCGGAGACCCCGGGGGGGACACAACGGCCGACCGCACCCCAGCCACGCCGGGGTCCAACCACCAAGGAAAANGGGAAAGGGAAAGCCGCCCCCCCCGCCCGCGAAGAAGGCCAAGGGCAGAACCCTCCACCCGGGGCGATCGTCCTCCGCAAAAAAAACACGGGCGCCCGGGGTTGTAATTAAAAGCCTTTTCGCCCCGAGGCGGAAGGTTCTTTTTGTGTATTACCACCAAAGTCGGGGCGGGCCAAACCCCTCCTCCTCTTCTTATTTGCATACCCCA 0 0 5' arm Triticum_aestivum mirnest MIR1122 3e-39 tae-MIR1135 1e-44 -69.1 ......(((((((((((((((((((((((((((((..(((.(((((((((((((((...........))))))))))))))).)))..))))))))))))))))))))))))))).)).... (-69.1)