mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTTCGGAATTACTT GTAATTCCGAATGGAGGGAGT GTTGATACTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTCCGAATGGAGGGAGTAGATACTA GATGGATGCTGCATCACTTCCCTGNGTAAACAAGCAATGTGTGAAATATCTGAATATATTGGAACTCTAAGCTACAATTTGGTTTATCAAGCACATCCTTCAAAAATGACAATCTAGTGATCAGTACAGCATCATATACAACAGAGCATCAAGCTACAGACGTAAATGCAAGTTTGTCAGCTAACAGTTGATACTACTCCCTCCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCATATCCGAGACAAGTAATTCCGAATGGAGGGAGTAGATACTACGAACTGGGAAGGGGATTATTCGATGAACTCATCATCGGTCTCGTCATAATCGCTATCCTCTTCCATATCCTCATCATCCTCATCTTGTACTTGCTCCACAAACCTATCTTTGTCNNAGGAATTATCATCCTCCATTTCTTCAACTCCNATTGTGTCATACTTCATACGCTCGTCGAATTTCGCATCAGAGCAGTTGAGC 0 0 5' arm Triticum_aestivum mirnest MIR1122 2e-43 tae-MIR1135 3e-57 -64.3 .......((((((((((((((((((((((((((((...((.((.((((((((((((...((....)))))))))))))).)).))...))))))))))))))))))))))))))))...... (-64.3)