mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCCGTTCGGAATTACTT GTAATTCCGAACGGAGGGAGT CTAGGTGGCACTCCCTCCGTTCGGAATTACTTGTCGCAAAAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATATCCAAGGCAAGTAATTCCGAACGGAGGGAGTACATACGT ACTGCCATATATGTACACAGAAATTCTCTCAGAAACACCGATTTCTAGGTGGCACTCCCTCCGTTCGGAATTACTTGTCGCAAAAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATATCCAAGGCAAGTAATTCCGAACGGAGGGAGTACATACGTGCTTGCCAGGTCAACTAACTTCTCACGGTATCAGTCAGCTCGTCTGACTGCATGCATCATAGGGGAGGACTGAGGATATCAATACTTTTGCACTCTCCAGCTGCTGCCTTGAACATTCATCGTCAACTCTGCCATCCTCCTTGCAATGCCTGTCGATCTCAAAGAAGCTCTCGCGCAGAGAATCACGAGTGAGCTGCAGGTTCTGAGAGGCTGACGAGCTGCTGCTGCTGCTCCCAAGCAGCTTGTCACAAACAAAGCGTGCCAAGCCTAAGACGATGCCATGCTCCGCTCTCTGCAGCGCCAACTGGAGGTTGGAAAGCAAAATGCCACCCACAGAATCCAGGATTTTAGGGCTTCCTTTCCTCAGCAGGGTCACCATCGTTTCTGCTAGCTTTCTGGACGACGGCGACTCCTCGTGCTCGTTCCCCTGCTCGCTCTGATCATCCTCCCTGGGTTCCTCAGCCTCAAACAGCTCGTTTTTGGCCAGAGCAGCAACCCACAGTGGTAAGTCGGAGTCACCCAAGTTGCACGTCTTGTTAGCCATCTCACTTTCTGGCCCGATCAACCAGCGGCATCCAAGGCCCAATATCAGGACTG 0 0 5' arm Triticum_aestivum mirnest MIR1122 4e-38 tae-MIR1135 4e-41 -66.4 ....(((..((((((((((((((((((((((((((......(((((((((((((((...((....)))))))))))))))))......))))))))))))))))))))))))))...))).. (-66.4)