mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACATTATGGGACGGAGGGAAT TCCCTCTGTCTCTAATATAA TACTCCCTCTGTCTCTAATATAAGATCTTATGGCATCCAAGCGAGTATATTGGATGCAATAAGATCTCACATTATGGGACGGAGGGAATAGATGTTTG TACTCCCTCTGTCTCTAATATAAGATCTTATGGCATCCAAGCGAGTATATTGGATGCAATAAGATCTCACATTATGGGACGGAGGGAATAGATGTTTGGTGCAGTTTTACAGGGTTCTTCTAAAAGTACAAACTGAAAATTATTAAGAAAGGCAAATTTTTAGCCAGGAATGTTTGAACGAGAATGTTAATTGAATATACATCCCAGCAAAGATCGAGTACATTGCCCTTCAGCATTGTGCGAAAGTTAACTCTCCAGGATATCTCAGTATGTAAAGCCCTCATGACTTGGCACTGTGCTGAACTTTCTGGCTACTGTTGCAAGCAAAGTCAGTCAAATCTGTCAATCCTAATTTCATCGCACTAGATCGAACTTGTACTGATCAAAGTGACAGTTATGGACATATGAGCCTTAACTAGATCTTGACATTACGCTTTTGGACTTTTGCCTTCTCAGCATCAATGATAGACTCAACCTGTTTAACAGCATCCTCAAGCTTCCCTTCAGCATTGACTACAACGTAGTCAAAATATTTCATCCGCCTCACCTCCTCTCTGGCTGTTGCAATTCTGACAAGAAGCATGTCTGTAGTTTCAGTTTTACGTTGAATGAGCCTTTTGACAAGTGCCTCCTCGCTCTCTGCAACTAAAAAGATGAAAATTGCAGATTCGCCAAGTATCTCT 3 1 3' arm Triticum_aestivum mirnest MIR1122 0.0003 100 -42.3 ((.((((((((((((((((...(((((((((.((((((((.........)))))))).)))))))))...)))).)))))))))))).))........ (-42.3)