mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACGGAGGGAGTACG TACTCCATCCGTTTCAAAATA TACCCAAACTCATACTCCATCCGTTTCAAAATAGATGACTCAACTTTATACTAACTTTAGTACAAAATTGGGTCATCTATTTTGGAACGGAGGGAGTACGTACTACACC GGTTTTGACATTCCACGGATCAACTCATGTATTCTTTTCGTCAATCAATAAATAGATGGGATACAATTTAGTCAATACTACTACTATCGAGTTCGCCATTGGCGCTCGAACACCTCATCCTTAATTAGTTTCCACCGACGCCTTACCCAAACTCATACTCCATCCGTTTCAAAATAGATGACTCAACTTTATACTAACTTTAGTACAAAATTGGGTCATCTATTTTGGAACGGAGGGAGTACGTACTACACCAGCATATCAGGCAAGCAAATCAAAAAACAAGGTATCGATCCCCAAATTAATGGCAATGGACCAGGGATGGATGGATCAGTTCTTGACGCCGAGCGGCATGGGCATGCCGTCCTGGACGGACACCGGCAGCGACTCGAGCTTGCAGTCGAGCGGCAGCAGCGTGCTCTCCTCGACGAGCACCCGGCTGATGAGCCGCAACAGCGTCTCCTCCATGTCCTTGCCGTCGCTCCACGGGTGCACCTCGGCCT 3 0 3' arm Triticum_aestivum mirnest MIR1122 1e-31 tae-MIR1137 7e-30 -48.7 ............((((((.((((((((((((((((((((((((.(((.(((((....))))).))).)))))))))))))))))))))))).))))))........... (-48.7)