mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTGGAACGGAGGGAGTAAA TACTCCCTCCGTTCCAAATTA CTCGCTAAGCAACTACTCCCTCCGTTCCAAATTACTCGTCTTAGAAATTGATGTATCTAGAACTAAAATACATCTAGATACATCCATATTTGTGACAAGTAATTTGGAACGGAGGGAGTAAATGGCTTCTTC AGAAAGATCTCTTAGCCAGGTTCCCTCCATCGATCCTCTCCCCGTCGTCGCTCGCTAAGCAACTACTCCCTCCGTTCCAAATTACTCGTCTTAGAAATTGATGTATCTAGAACTAAAATACATCTAGATACATCCATATTTGTGACAAGTAATTTGGAACGGAGGGAGTAAATGGCTTCTTCTTCCAGCGCCCGAAGCAGCCGCGTGGCCACATGCCTCCGTGCTGCTTCTCCTGGGTCCGTCAGCCTGCGAGAAGCTCAGCCGCGCGCCCGCTCCGGCCGGCGGCGACATGTCCAGCGAGGTGAAGGACCAAGCGGCCTCCGACAAGTTACGCGCCGCTTCTGCTCCGCCATGCTGCCCAAGGCCCCGACTGCGCCTTCCGCCCCCGAGCGGTGGCACCAACGAGGCCAAGAACGGATGAAGNCANCCGCAAGGTTTCCACTAAGATGGAGGTTCATCTCTAAAAAGAGAATCGTTATG 2 0 3' arm Triticum_aestivum mirnest MIR1122 2e-31 tae-MIR1136 1e-34 -62.3 ......((((...(((((((((((((((((((((((.(((.((((.((.((((((((((((...........)))))))))))).)).)))).))).)))))))))))))))))))))))....)))).... (-62.3)