mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTGGAACGGAGGGAGTAGT TATTCCCTCCGTTTCAAATTT TTTACTAACTANTATTCCCTCCGTTTCAAATTTGAACTAAAACCACGACNAGTAATTTGGAACGGAGGGAGTAGTATTTAATTG TTTTTTTTTTTTTTTTTTTTACTAACTANTATTCCCTCCGTTTCAAATTTGAACTAAAACCACGACNAGTAATTTGGAACGGAGGGAGTAGTATTTAATTGAACCAANCACCAATCTGACNGCAATCTCTTGCCTGACCAGACANCACTGAAAACATCTCATTACAAGTATACCGTGTCAGTACAAGTACCATATACAACCCATCATAATTTCATAANGGAGTCAATATCTCACGGCCGCATGGGCTTTCATAANATGATGAGCCAACTATTGGGCGAAAACCGCTAAATCTACATACAGTTGTCCTAAGTACAANGATTANCCACAAGGAAACTCCATGCNATGCNACNAGCACAAGGCAAACCNCAACTGTTAAAACGGTCAAGGTNGGGCCCTGTATCCNCNGCCCAACAACTNTCCAAGAATNNTAAAAGGCAACGCAANCGTCACNCANAANAAAGGTNTACCAAAAGGAACCCCCGGCAAAGGTTGATNAAATTCATCACAACACATCAGGTGAACACGGGAAAAAATTGGGCCCCTTCTTCCNCCCATTCATTAAANCATANCNTCAGGAATTTGTGCAAAACCATNAATATNCCCCCAGGAAANGGCANCTGACCCCCCAAAAANTTCTANAAGCGGTTAGGGGGGGGAAAACCCNN 1 0 3' arm Triticum_aestivum mirnest MIR1122 8e-17 tae-MIR1136 0.00006 -28.5 .....(((.((.((((((((((((((((((((...(((............))))))))))))))))))))))).)).))).... (-28.5)