mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACGGAGGGAGTATC TATTACCTCTGTCCCAAAAAG AAACAAACTTCTATTACCTCTGTCCCAAAAAGCTTGTCTTAGATTTATGTAGATACGGATGTATCTAACACTAAAACATGTCTAGATNAATCCGTATCTTGACAAATCTAAGACAAGCTTTTTGGAACGGAGGGAGTATCATATATCCA ACCCACGCTTCCGCTTGAGAGATCCCATGAGCACCTACTTGTCTCAGCCTCAACCCCGTTACTGCTCGGTGGGAAGGGGAAGACCATCTAAGGGATCCTAAATTTCAGCTGGATGCATTCAGATACCGAACATCTAGACTACTGCATAGTGTTGCTGCTCGACTCCAGAAGCACATGAAGACACTTGGAGGTTTTGGTGCGTGGAACAGATGTTTAAACCATCTGCTCACGCTCGCGGAATCACACGTTGAGGCTGTCATCCTCGCAAGGTTTATAGAAGCAGTGAAGAGCTGCCCTGATGCGAAAACACGTGAAGTACTGAAGCTGGTTTGCGACCTTTATGCGCTCGATAGGATCTGGAAAGACATCGGGACATATCGGAATGTAGACTATGTCGCGCCAAACAAAGCCAAGGCTATCCACAAACTGGTAGACTACCTCAGTTACCAAGTGAGGCTTGTTGCTCGAGAACTCGTCGACGCCTTCGATCTTCCAGATGAAGTCATCCGTGCGCCAATCGGCATGCAATCGGAGGCCTACGCTCAGTATACGCAGTGTGTCGGCTTCTAGACAAACAAACAAACAACATAGGCCTACCATATTCTACTGCAAGCCCAGACCGTTAGTCAAGAAGTTATATATAAACAAACTTCTATTACCTCTGTCCCAAAAAGCTTGTCTTAGATTTATGTAGATACGGATGTATCTAACACTAAAACATGTCTAGATNAATCCGTATCTTGACAAATCTAAGACAAGCTTTTTGGAACGGAGGGAGTATCATATATCCAACATAGTANATCGAGTGTATAATAAGANNTAGTATAGACATGAGATGTGTANTAGTGATAATATTGTGAAACAATTTTGTCAGGCTGTGTTTTGGCAGCCACTCTGTGAATAAAGCTCGTCGCACGTGAAAAAAAAAAAANNNNNNNAAAAAAAAAAAAAAANAANANNNNNNNNANNCCCCAAAAANNNNGGGGGGGGGNNGNNNNNGGGNNCCNGGGGCCCCCCGGCCCCCCAAGCGGCGCACCCCGGGGCCCAGCCGGAAAAGACACGGGGGGAAAGAACCAACGGAACCGGGGGGGCCGGGGCCGGGGGCAACAAAAAGAACCAAGAAA 4 0 3' arm Triticum_aestivum mirnest MIR1122 3e-24 tae-MIR1122 4e-23 -62.1 ...........((((.(((((((.((((((((((((((((((((((....((((((((((..((((((((........))).)))))..))))))))))....)))))))))))))))))))))).))))))).))))........... (-62.1)