mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACGGAGGGAGTAGT TACTCCCTCCATTCCAAAGTT CGACTTGCTTTGTACTCCCTCCATTCCAAAGTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAGTTATCAGGGC GTCCTTTCTTTGCACACAACTCCATAGTTGAAAGCGACGCCTTGACCAATCTATCTATGTATGCTCTAAATCAGCTCATTCCTCAAACTGTTATCCTGTTTTGCTTGCTCTTCAGTCTGCTACACTACTGCAGGGCATTGTAATAAATGCTGTATTATGTTGTTGAGCTGAATGAAATCTGGCGCCTCTGGCGCTCTCTGTTGTTAAAAAAAAAACATAGTAGGCAAGTTGTGTATTAGGATACTAAGACTACCACTCAGTTTACCGCCCAGTCTTTTGACAAATTTCAACCAAGGGTTCGCTCTGACAGGCCCATCATTTTGTCATATGTATGCTGGCATCGACTTGCTTTGTACTCCCTCCATTCCAAAGTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAGTTATCAGGGCCTANACTTTGGTTTCTTGATCGTCCATCCCGATGGGTGCCTGTCTGTACGTATTCTACTTCTTGGGGCATGAAACCTTCTCCTTGGGGCAAGGAAGTATAAGCTCAATGCAAATAAATAATGCATACCCCCAAGCACAAGCACCATGAAGAGGAATTGCCCCTTCTTCATCTTTGCACTGTAAGGTTGCTCCACCTTGCTGCAAAAGCTCATCANAAGACTTGCAATTCAACTGCTGTAGCCTGATACCTGCCCACCGCCTAANACTCTCGTCAGTTTTTT 3 0 3' arm Triticum_aestivum mirnest MIR1122 3e-16 tae-MIR1137 0.00000000000007 -28.3 ......((((((((((((((((.(((((((((.((.((........))...))))))))))).)))))))))).....)))))) (-28.3)