mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCCCTCGGTCCCAAAAT TTTCGGGACGGAGGGAGTATGA GCAGAAACAAAATAACAATTACTAAGTTATAGTACTCCCTCGGTCCCAAAATATATGTCTCAACTTTATACTAGCTTTAATACAAAGTTTAACAAAGTTTTCGGGACGGAGGGAGTATGAATTATAAAGGTAGATGTAGGGCATGACG TATAGATACAGATATATCCGTCACGTAAGAAACAAGATCCTAATATAATGTTTTTACATAACGCAGAAACAAAATAACAATTACTAAGTTATAGTACTCCCTCGGTCCCAAAATATATGTCTCAACTTTATACTAGCTTTAATACAAAGTTTAACAAAGTTTTCGGGACGGAGGGAGTATGAATTATAAAGGTAGATGTAGGGCATGACGCCGACGGCCTGAGCGGCAACTTCAACACCGTTTCGACACGGAACTGCACCTCATTCTTTACCAGTCCCCGTGTCCTCGGAAGTCCTTGTGCTGGACTTTCCAGACTTCTTCTTTTCTGCCAAAAACTTTTTGCAATTCCTTTTCCAGTGACCCTTGTCCTTGCAGAAGAAGCACTGAGTCTCTTTAGTAGCACCGCGTTTAGGCTTTCGCTTGGTGTCGGTCTTAATGACGCCCTTGCCATTTTTAACTTTGCCCTTCTTCTTGAAATTAGTGGTCTTCTTCGTCAAATGATTGGTGCCTTTCTGCATCCAAAACTCCGCGTTCTTGAGCATCACGAGCAATTCATTCACGCTCTTGTCCATCTCGCACATCATGTAATTCATGATAAAGCCATTAAAGCTTGGCGGGAGAGACAGAAGGATAAGATCAGTACAAAGCCAGGGGGGGATCGGAGAGCCCAAAGCTTCCAACCTCCACATGTAACGAACTAGCTTGACCAGGTGTTGGCTCACTGAGCTTCTTTCTGCCATTTTGCACTCCATTAAGGCCTTGGTTATCTCGTAACGTTCGACATTTTTGTAAAGAGCATTCCCCANAGGCTGGNGGGACAG 1 1 5' arm Triticum_aestivum mirnest MIR1122 0.00000000000004 100 -36.1 ..............(((.(((((...(((((((((((((((.((((((((((...(((...((((((.((.((....)).)).))))))..)))..))))).))))).))))))))))....))))).))))).)))........... (-36.1)