mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTACTCCCTCCGTTCCTAAA TAGGAATTGAGGGAGTACTTG AAACTAAAGCATGTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGATATTTCAACAAGTGACTGCATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTGGTGTTCCATTTAAAATCTCTAGAAAGACAAATATTTAGGAATTGAGGGAGTACTTGGAAAGGAA CACAACTTGTAGAGTAGTTCTTTTAACAAGAACAAGTTGTGAACGCGAATCATAGGTCTATCCTCACATTTGCACATCTTGCTTTGCATTTGTGATTCTGCATCGACCACCAAGGTAACATAAAAAAGGTACGAAGACCAGGATAAACTAAAGCATGTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGATATTTCAACAAGTGACTGCATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTGGTGTTCCATTTAAAATCTCTAGAAAGACAAATATTTAGGAATTGAGGGAGTACTTGGAAAGGAAAATCAAATAAATAGAAATTGGCTAGTATACTTGTGGATAGGTTAGACAGAAAGTCAGCAAGAACGCCCAACTCTGGCCGAGAACACCCGCCCCTACGCGCAGTACAGATCTGGGCAGCCACCGGATTCACACTGTACCACATAACCAAATGGCAAGCAGCAGCGGGCAAGATCGTACAACCAAAGCTAGGAAGGAGGACTGGAGGAGCACGCGATCCAAACATCAGGATGAACTAGGAAAACAACCTGAACGCGAAGGACAGAAAGACCCACGGCTCGACGCAGGCGACAACGGCAAGTCGAACCAAGCTCAACCAGCGGCGTCCATAGAGCAAAGGAGGCCACCGCAACAGACCGCAGCAGAGGAC 2 0 5' arm Triticum_aestivum mirnest MIR1122 4e-27 tae-MIR1122 5e-23 -72.1 .........((.((((((((((.(((((((((((((((((((((((((.((((....((((((((((((((((((((....(((((......))))).......))).........))))))))))))....))))).)))).))))))))))))))))))))))))).)))))))))).))........ (-72.1)