mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACGGAGGGAGAA CTCCCTCTGTAAAGAAATATA GTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCGCTAAAGTAGCAATCTAGATGCTCTTATATTTCTTTACGGAGGGAGAA ACAACATTCCACCTAGTGGATAAAGTATACATGTTGGTGAAAAAATAAAAATGAATTTGTAAAAATATAACGAAAAGAATATGTCAGCTGGGGTAAGTAGGCAACACAATTACTACGTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCGCTAAAGTAGCAATCTAGATGCTCTTATATTTCTTTACGGAGGGAGAAT 2 0 3' arm Triticum_aestivum mirnest MIR1122 9e-20 tae-MIR1121 8e-26 -52.1 ...((((((((((((((((((((((((((((((((((.((((...)))).)))))))))))))))))))))))))))))))))).. (-52.1)