mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCTCAAAATA TTTTGGGATGAGGGAGTATC AGTATGATATGTACTCCCTCCGTCTCAAAATAAGTGTCACTAATTTAGTACAAAGTTGTACTAAATCAACGACACTTATTTTGGGATGAGGGAGTATCATTCTCTT TGTCCACGACGGTAGGTAGGTAGCTTACTATACGACTTACTATAGGGACCACTTTGTACAAGAAAGCTGGGTACGCGTAAGCTTGGGCCCCTCGAGGGATACTCTAGAGCGGCCGCCCTTTTTTTTTTTTTTTACTAGAACATAGGTAAATCATTTAGATCAGTTGCATCATTCATGAATTCCATAGTTCTTACACCACAATTTGCGGCCAATATTTCATTTGATAGTATGATATGTACTCCCTCCGTCTCAAAATAAGTGTCACTAATTTAGTACAAAGTTGTACTAAATCAACGACACTTATTTTGGGATGAGGGAGTATCATTCTCTTTCATCGTGCACAAATACTCCAGATAGTTGTCCTGTCTAGAGCAACTATCTAGAGTAAAATAGCCACTACAATGGGTACATCTTGAGGGTAGTCACACCTAACAATACCAGATGCAGAATTACACTACGAAAAAACGAAGGGTCACACATAGATGCCTTATAGCCTTCGCTGTGTCTGCAGCTGCGAAGGCTCCACAAGACCTTCCAAGACAACAAGCTGATCCAGCAATGCAAACTTCTCATCCTCGAGAGTTTTGGCTTCCTTTTCTGCCATGCCTAATTGTGCATCCAGCGTGTAGTTCTCTTCCTCCAGCATCATGTACTTCCTCCGTAGCGCCCGATATTCATCCGGAGGACCAGAATCTGGTAGCGAGTCCGGGGTTCCTCTGTCAGACTGCGGCATGGGAGGGGCGGGGCTCACTCCTGAAGCTTCTCTTAGGTGGGTTCTGTGTATTTGGCCACGGAATGTGGAATGTCCCTCCGGGAG 0 1 5' arm Triticum_aestivum mirnest MIR1122 0.000000000000006 bdi-MIR5067 0.00002 -45.5 .....((.((((((((((((.(((((((((((((((((....((((((((((....))))))))))....)))))))))))))))))))))))))).)))..)).. (-45.5)