mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGACAGAGGGAGTANA TACTCCCTCCGTCCCATAATA CCTAATAACCAAGTACTCCCTCCGTCCCATAATATAAGAATGTTTTTATACTAGTATAGTGTTAAAAACGTTCTTACATTTTGGGACAGAGGGAGTANAAAAGTTCAAC CCAAGACAGTGCACGCATGTGCACCATCCATGGNGATCAGACCCTAATAACCAAGTACTCCCTCCGTCCCATAATATAAGAATGTTTTTATACTAGTATAGTGTTAAAAACGTTCTTACATTTTGGGACAGAGGGAGTANAAAAGTTCAACGAGCACAACAACTCGTGAAAACACCAACTGAATTTGAAGGCGAGCACAGCAACAACGATGGAACGGGGCGACATGATCTCTAATTANTTGCCGACGCAGTGAGCGCGGCGTTCCACTTTGGATAAAGAACCGTTGAGATGTACTCCTCCACCTTGTCCTCCGCANGCAGCANNGCCCTAACCGGCTCGGCGGCCCTGAACCGCTCCGCCCACNCGGCCAGCTTTGGTGTCCTANCCGCGTCGAGGAACGGCGGCATGGCGGCAAGGTGGCCTATCGCTTTGATCCAGGGAANATAGCACCCCAGGGCAATGTCGAGCAGCCCGAGAGAGCCACCGCCAAAGAACAGTGCCTCANCCTCCCCTTCTTTGGAGCACTCCGCCAGGGCGGCCTCTAAGAGCCCGAACGCCGCCAAGGTCTCCTCCACCTTGTCGGCTCTCTCATGCTGCTTTGCCGTCTTGAGAATGCCGATGCATGAAGGGAACAAACTTGTCGTCGATGTANGAAGCCCAAAAGCGGGCNGACGGCACGGCTGTANGGGTCGGT 4 0 3' arm Triticum_aestivum mirnest MIR1122 7e-18 hvu-MIR1120 0.00000000002 -43.2 .............(((((((((.((((((.(((.(((((((((((((((((((...))))).)))))))))))))).))).)))))).)))))))))............ (-43.2)