mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCTGTAAAGAAATATGA ATATTTCTTTACGGAGGGAGT TTAACTTGTACTCCCTCTGTAAAGAAATATGANAGCATTTANATCCCTAAAGTANTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGCAGGAA GCTGAAACACTTCTTCATGTTCCACGCCTCANAATTATTTACTGAATTCCTGCACTTAACTTGTACTCCCTCTGTAAAGAAATATGANAGCATTTANATCCCTAAAGTANTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTAGCAGGAAGTTGAAACTGTCAATGTTTTCTTCTTCATTTTGTTCCTGTGTTGATGAGAATACTGTAAGTATATTTTTTGAACAGATACAATACANGTATTTTTGTACAGGATANAACGAANACGCAANAAC 0 0 5' arm Triticum_aestivum mirnest MIR1122 4e-22 tae-MIR1121 6e-27 -47.1 ....((((((((((((((((((((((((((((.(((.((((.(((..((...))..))).)))).))).)))))))))))))))))))))))).)))).. (-47.1)