mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCTCTGTAAAGAAATATAA ATATTTCTTTACGGAGGGAGA TTACTACGTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCGCTAAAGTAGCAATCTAGATGCTCTTATATTTCTTTACGGAGGGAGAAT ACAACATTCCACCTAGTGGATAAAGTATACATGTTGGTGAAAAAATAAAAATGAATTTGTAAAAATATAACGAAAAGAATATGTCAGCTGGGGTAAGTAGGCAACACAATTACTACGTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCGCTAAAGTAGCAATCTAGATGCTCTTATATTTCTTTACGGAGGGAGAAT 0 0 5' arm Triticum_aestivum mirnest MIR1122 1e-19 tae-MIR1121 9e-26 -52.1 ..........((((((((((((((((((((((((((((((((((.((((...)))).))))))))))))))))))))))))))))))))))... (-52.1)