mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCAAACATATCTGAGCACAG GTGCCGTGATGATTGCTTT CTCGTTCTTCTGCTGTTTTTGTGCCGTGATGATTGCTTTACTTCTGACACCTCTTGTACGAGAAGCGCCTTGATGCGCTTCGCTGAGCAGATTGCAGCAAACATATCTGAGCACAGTCACACGCTAATTTGTTTG CTCGTTCTTCTGCTGTTTTTGTGCCGTGATGATTGCTTTACTTCTGACACCTCTTGTACGAGAAGCGCCTTGATGCGCTTCGCTGAGCAGATTGCAGCAAACATATCTGAGCACAGTCACACGCTAATTTGTTTGTTTATTTTTGATGGATTTGCAACGACAACTAGTATCTTGGTAAGAATCGTTGGCCGTGATGAGCACTGCTTATTTCTGACACCTCTTGTATGAGAAGGGACTCGTCCCTTCCATGAGCAGATTAGCAACCCTCTGAGCTCATCTTACGATCAAGATCTCATCCTGTGAATGTCCCTTTTCCGTTTGGTTATTTTTCTTGTCATTTGGCTTCAATATGGGCAACAGCTGTGACGAGCATCGATTTCTTCTGACACCTCTTGTATGAGAAGTGTGCCACTCTCTCGAGAGAGGCACCCTTCGTTGAGCAGAGTATAGCAACTGTCTGAGCTTTTCTTATGTTGCTTGCGCCAGCTTTACAATTTTCGTTGGCCATAGTATAGCCTGTTACGGTTGTCCTCCTGGTTGACTCTCTGAGATTAGTTGTGTGT 3 2 3' arm Triticum_aestivum mirnest snoR1 0.000008 100 -33 ...........(((((..((((((((..(((.(((((.((..((((....(((..((....(((((((......))))))))).))))))).)).))))).)))...)).))))))..))).))........... (-33)