mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCGTCCCAAAATAAGTGT ACTTATTTGGGGACGGAGGGG TGTATCCCAAATACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTATACTAGCTCTAGTACAAATTGGTACTAAGCTCAAGACACTTATTTGGGGACGGAGGGGTATATCTCTAAC GGGGGTGGAATATGATGGATGTATTATGGTGTCTCGAGGGCGAGTATATATGGAGTACAAGACTGGGAGGGCAAGAAACTCTCATGAAGATAAGGTAGAAGACAGATTACAAATTCTAGATTATCAAATACATGTATCCCAAATACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTATACTAGCTCTAGTACAAATTGGTACTAAGCTCAAGACACTTATTTGGGGACGGAGGGGTATATCTCTAACACTGTTCATACAGTAGGTCCGAAAGAGATCCTGCACGGACAGCTCTTCGAACTGAGCGTGCACAGGAGGCTTATGAAGGCGCGCTAGAAATGAGCTGCGCCAGTCCTCGGGTCTTCACTAGACTGGCAATCTTTCCAGGGTTTCATCTGGTAAACTCTTCTCTTCAACCTAAGTCGCAGCATAATGAATAATCAGGGTTATGGCTCCACAAAAAGATCAAAAATAACACACAATCATTCCGACTAAGTTTTTTTACCGGGACCGGTACCTACC 1 0 5' arm Triticum_aestivum mirnest MIR1122 4e-32 far-MIR1122 0.00000002 -46.3 ..........((((.(((((((((((.((((((((((((............((((.((((((......))))))))))..)))))))))))).)))))))))))))))......... (-46.3)