mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATACTCCCTCCGTCCCAAAAA TTCGGTATGGAGGGGGTATTA TTCCCTATATCATACTCCCTCCGTCCCAAAAAGTTAAATCATTTTCTNAAATTTTATTATTTTCGGTATGGAGGGGGTATTATACCGCTC CACCAGCTATTATAGATGATTACGCCACAGCTATTTATGTGACACTATAGAATACTCAAGCTATGCATCCAACGCGTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATTTCGAGCGGCCGCCCGGGCAGGTGGGCTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAACAGTACCACATTATAAAGAGCACTATAACAACGCGTTACAAAATGTACACTTACAGCCATTCCCACCTACTAGTTTACACTATTGACAAGCATCAAGCATAGATACATTTCCCAGCAACAGTTTAAAAACAAAGTCAGGCTAGCACATTATCTCTCCCCGCAAAAATGCCATGCTCAATTACATAATGTCGTCCAATACTGTACGAAATTATTTCATATCAAAGACAAACTATCTTTGCGCTGATTGCTGAGTCTTCTCTTTTGCATAGCAAAGTTTCTCATTTCCCTATATCATACTCCCTCCGTCCCAAAAAGTTAAATCATTTTCTNAAATTTTATTATTTTCGGTATGGAGGGGGTATTATACCGCTCCTTATGTCTTTTATGCATGGCATGTCTGTTTCGCCTCATANGATCATTAATCTGATGCTCGCTGGAGATACGCCTCCAAGATCCTCTTAGGTTTCTGCTCAGACTGCTCTTTTGGTCCNNNGTGTGCCATGAATTTCTGGAACTGGTCTGAACTTGGTAAGCTCAGCATCCCCATGGTTAAGCATCTGAGGAACCCCATACTATCTGATCCTCAAAACTGCATCCTCCGGAATCTCTCATTCACGCAAACGCCCACCTTAGAGGGGGCCTTGGTTGATTCAATGATACGTCTTCCGAACACGC 2 0 5' arm Triticum_aestivum mirnest MIR1122 0.00008 tae-MIR1122 0.00007 -25.3 .......(((.(((((((((((((.((.((((..((((....(((...))).))))...)))).)).))))))))))))).)))...... (-25.3)