mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATATTTTGGGACGGAGGGAG CCCTCCATCCCAAAATATAAG GAAAAATAATACTCCCTCCATCCCAAAATATAAGAATGTTTTTCACACTAGCATAATGTCAAAAACGTTCTTATATTTTGGGACGGAGGGAGTACAATACAG TTTTTTTTTCTTTTTGATAAGCAAGGGATGCTATATTCTCCTGCGAAATGATGGTTGCACTGCAAGATCAATAAATCAACCGGTATACAGGAAAAATAATACTCCCTCCATCCCAAAATATAAGAATGTTTTTCACACTAGCATAATGTCAAAAACGTTCTTATATTTTGGGACGGAGGGAGTACAATACAGCATACAAACAGCACTACAGTCAATCTTCGAGTACCGGCAAGGCATACAGACCTGCACCCTGAAAATTGCACATTGTATGCTCTGGCCTGTATAGCAAGCCACATCTTTGATCCTAAACCCATGGTGATGCTGTAAGCTGGTAGACATATCTCAAGTTGATGAGGCCTCCTTCAGCATTCCATCAGCTCCACTTACACTGCCATTGCCATTTCGAATGAGCTTTTCCTCTGAAGGTAGATTTTTCATTATTTTTCTAGTTGGTCCTGAAGCGTTCCACAAGTACCACACACGTGATTTTGGGGGTGGCACAGCTCCCGATACAGGAGCTACCAATCCAAGTTTGCCCTCATCTACAATGCTGTCAATTATTCCATAATCCTTGGCCTCCCAAGGACTCATGAAACAGTCAAACTTCGTGTCCTCGTCAATCTGCTCTTCAGGCTTTCCAGTGATCCTTGACATTATCTTGTTGATCTTTATCTTCTCATAGAGCATTTCTGTTATCTGCAATCCCATCTCTGTGGCCTTCCCACCAGCTCCCCCTGATGGCTGATGGATCATAATTCTCGCATTTGGCATGCAAAATCTCTTTCCCTTTGTCCCAGCAGCTAACAAAAATGCACCCATGGAAGCCGCCAATCCAAAGCAAACAGTTGAGATATCAGCCTTGCAAAATTTCATGGCATCATAAATCCCCATTCCTGCAGTAATGGAGCCTCCAGGTGAATTAATAAACAACTTGATATCCTTTGTGTGGTCCTTNGCATCCNACAGT 1 0 3' arm Triticum_aestivum mirnest MIR1122 1e-22 tae-MIR1120 2e-17 -49.5 .........((((((((((.(((((((((((((((((((((((.(((.((...)).))).))))))))))))))))))))))).))))))))))........ (-49.5)