mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTTCTCAGGTCGCCCCCG GGGTCGAACTGGGAACACATG AAGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGCCCCCGCTGGAGCCTCCTCGCCGCA AGGATATACAGATACAGCCATAGATTTCCGTCAGCGTAGTAGGAGTGACGTGACGGTGAAGACGCGAGGAAATTCCTGCGGGGTCGAACTGGGAACACATGGGATACGAACCGCTTGATTGAGGAGCGACTCTTATCAACTCATGTGTTCTCAGGTCGCCCCCGCTGGAGCCTCCTCGCCGCAGATCCACTACTTCATTGATGCATGCATGCTCAGTCGTCGGCCAGGCGTGCGCGTGTTCAGAGGCCTCTCGGTTTCATCGGAGATCAAACTGGTAAATGTGCAACTGCTTCTCTTCTCTTGATACCAATGTGGGTCCTAAATGTACAAAACCACCAACTCCAACCTTCCAGTTGCGCAATTCCACATTCATCATCTGATTCTCTTTCCCTTCAGAGTACGTCCCCATGAACCCCTACCATTAACCGTCAGTAGCATGTAACTAGATCCCATTACAAACGCTGCTGAGAGCATCATAGATCTGCCTGGTTGTGCTCTCGTCGTCGCAGTAGATCACGGTCCTTTCAGGCGCCATCTTCACCAGAGCTTCTCCCGGACTGGTGATCAAAATCGAGCGCACGCAGCCCGCCGAGCCATCATCGTCGTCTGCAGGGAAAGCACACGCGATCCCCTTCTCTTGCAAGGCTGCCAAAAGACGGCCTGCATCGACAGCTCCCCAGTGTAGCAGCTGCCGCATCGACTGATTGGACTGATCCTTCGGAGCTGCTACCAGCACGTACTGCCCGTTGCTGANATGGAGCTTTGCTCTCANCCTCGCGATGGCGATGG 2 0 3' arm Triticum_aestivum mirnest MIR398 0.0000005 tae-MIR398 8e-64 -61.4 .....(((((((..((((.((((((.(((.(((((((((((((.((((.((..(((((.......)))))..)).))))....))))))))))))).))).)))))).))))..))))))).... (-61.4)