mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACAGAGGGAGTA CTCCCTCCGTAAAGAAATATA ACAATACTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTAAAGGAGTGATCTTATATTTCTTTACAGAGGGAGTACCATTC TTTTTTTTTTTTTTTTTTTGTTAGATCAACAGGGAGGAGCTCCATTACTTCAGCAGAAAGAAGCCCAAAAACATCAGGTTCGATACATAATACATCAGTAATAGAAAAGAGAATAAAACCTCTATAACCTCACACTAGTTGAACAAATGTTACAAGGATCAAAACATGGTCAGCCTCTCTCCTGGACTTGAGCACAGGGGGATTTGGTCCACCCAATCTTGGCAGCAGGTTTTGGAGATGTAGACAGAGGAGATCCATCTTCTTCAACATGTGATCCTTGAGGAGCAGGCGCCAGCGCCATTTCCAGACATCCAAACGGCACCATTAAAAACAATACTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTAAAGGAGTGATCTTATATTTCTTTACAGAGGGAGTACCATTCATGTGCTTCCACACAGCCCAGAGAATAGCAGCAAGAGACAGTATATATGAAAATGACAACACATGGTAAAGGGCACTCAATCCAAGCTTTTGCTTGATTTTGTTCAACAGAAGACTTTGGTTGCTTGATCATAGCCAAAGAGGTGACACACAAACAAAGAAATTGCGAGGAATTAAAGTGCAATGGGCCTAGATTCCTTACAAAGGCACTAATCCAGCATACTAATTTCAGCCTAGGTTCCTCAATCATTTAGGAACATATCTGAAGTACAAAAAGAGGGTAGTTTTGTTACTAATTGTACAGCGCTG 1 0 3' arm Triticum_aestivum mirnest MIR1122 6e-18 tae-MIR1121 8e-17 -36.4 .......(((((((((.((((((((((((((((.........(((((.....))))))))))))))))))))).)))))))))...... (-36.4)