mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATCTGGAGAAGGTGCATGATG TCCTGTATAATCTTCAGACCG AATTCATTGCCATCCTGTATAATCTTCAGACCGGGTGAAATTTTGATTTCCACCCAGCCATCTGGAGAAGGTGCATGATGTACCACATT GCCTGCATACACTTTATTTAAGCAGGAGAACCGATATATACATGTTGATACAACAATTTAAATTTACTACAAATTTGGTAGCATACGGTGAGGAGACAGACAGTATGGCAACGGATAGGCTTAGTAGTCAAAACTAATCAAATGGGAAGGGCTTTTTGACAAACCATGAAAGGTTTACCAGAATCTTGTCGACATATCTATGCACAATTGAGGTGCCCGTGCCAATAATCTTTCGAGAAACTGGAAAGTTAGGTCGCATGGCTTTTATCTGCCAATGACCCTCTTTGCCTTTCCTTCCTAGTTTTAAATTCCAGGTCAATGCGGAAATAAGATTTATTGCGCTCTCTAACATAGTGGACCTGACCATTCATCCCGTTGAGAAGTTTCCGAGACAGGTTGAGCCCTAAGCCTTCCTGTGTTGTCCACTGGTTTCCTCCCTCAAACATATCTTGGATAAGAGCAGAAGGAAGGCCTTGACCAGGGTGAGTCATTCTGAATTGTAAACGGATAAATTCATTGCCATCCTGTATAATCTTCAGACCGGGTGAAATTTTGATTTCCACCCAGCCATCTGGAGAAGGTGCATGATGTACCACATTAAGCAAGAAATCTGACAAGACCAGTTGAAGCCTAATTTGATCACCAT 4 0 3' arm Fagus_sylvatica mirnest 100 100 -23.3 ..........((((.(((((..((((((((..(((((((((....)))).))))).....))))))))..))))).))))......... (-23.3)