mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTCCCTCCGTCCTATAATTT GTAATGGGACGGAGGGAGTTT TCCGTCTAATATTTAGTAACTACTCCCTCCGTCCTATAATTTAGGACGTAATGGGACGGAGGGAGTTTGAAACAAAGTACTGTACA AGGTATGTGGTAGTCTATTTGAAATCTCTAAAAAAACAAATATTTAGGAACTACTCCGTCTAATATTTAGTAACTACTCCCTCCGTCCTATAATTTAGGACGTAATGGGACGGAGGGAGTTTGAAACAAAGTACTGTACAAGACACCCTTGACACATGCAACTTAATTATTATAAATCCCATAGGATCAACGAAAAAAAAACAAAAAAGACGTCATGGCAACTTGCCAAACGCAACACAAGCTATAGCCGTGTCCCCTACGTCGGAGGGGGAGAGATCATCCAGACACCAACAGAAACCAGGCAGCAAACCTTCGGAAGCTTCCTGGTGCCATTGTGCGTTAATGACTCAGGGAATAATATACCTCAAACATTTCGAATGGAAAACTTCGCGTCCGGTAAGTTGCACCTCCTGCCAGGCTACAAGGCATCCAATTCTGTAAGAAGCATCCAACTGCACCGTGCCATCAATCACTTGCTACAATAATTCAGGAAGCCTTTATTCTTGCTTCATGTAGGATTTGTACTCTGCACACTTGGGAGACCCAAGAAGCGGCCTATAAATACCTTGGTCCATCCATTCCCCAGTTCATCAAGCACACGACAGCTTAAGCTTCTGAGCCTTCCAGTGCCGGAACAGAGCAGCATATAAGAATGGCATCCCTGAAGGCCGTGAAGCCAACCGGACTTGAA 3 0 5' arm Triticum_aestivum mirnest MIR1122 0.000005 100 -32.7 ...((.((.(((((.((....((((((((((((((((.((.......)).)))))))))))))))).....)).))))).)).)). (-32.7)